Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HAT1

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2 cells
cell line
HepG2 cells
cell type
hepatocellular carcinoma
chip antibody
HAT1 (Abcam ab194296)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP assays were performed by using a SimpleChIP Enzymatic Chromatin IP Kit (Cell Signaling Technology, USA) Enriched DNA fragments were subjected to library preparation and next-generation sequencing with Annoroad Gene Technology using a Novaseq6000 (Illumina).

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg19

Number of total reads
23116510
Reads aligned (%)
167.6
Duplicates removed (%)
12.7
Number of peaks
313 (qval < 1E-05)

hg38

Number of total reads
23116510
Reads aligned (%)
170.0
Duplicates removed (%)
12.4
Number of peaks
1100 (qval < 1E-05)

Base call quality data from DBCLS SRA