SRX5794315
GSM3752515: BRCA1 201 TCF7 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Breast organoids
NA
NA

Attributes by original data submitter

Sample

source_name
breast organoids
gender
female
tissue
breast organoids
genotype/variation
BRCA1 mutation
antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
phenol-chloroform extraction for ChIP DNA Rubicon ThruPLEX DNA-seq Kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24963054
Reads aligned (%)
97.1
Duplicates removed (%)
18.5
Number of peaks
932 (qval < 1E-05)

hg19

Number of total reads
24963054
Reads aligned (%)
96.8
Duplicates removed (%)
19.4
Number of peaks
856 (qval < 1E-05)

Base call quality data from DBCLS SRA