SRX5794312
GSM3752512: BRCA2 393 TCF7; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF7

Cell type

Cell type Class
Breast
Cell type
Breast organoids
NA
NA

Attributes by original data submitter

Sample

source_name
breast organoids
gender
female
tissue
breast organoids
genotype/variation
BRCA2 mutation
antibody
TCF7

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
phenol-chloroform extraction for ChIP DNA Rubicon ThruPLEX DNA-seq Kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32556090
Reads aligned (%)
97.2
Duplicates removed (%)
42.6
Number of peaks
6003 (qval < 1E-05)

hg19

Number of total reads
32556090
Reads aligned (%)
96.9
Duplicates removed (%)
43.2
Number of peaks
6188 (qval < 1E-05)

Base call quality data from DBCLS SRA