Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TCF7
wikigenes
PDBj
CellType: Breast organoids
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5794311
GSM3752511: BRCA2 156 TCF7; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TCF7
Cell type
Cell type Class
Breast
Cell type
Breast organoids
NA
NA
Attributes by original data submitter
Sample
source_name
breast organoids
gender
female
tissue
breast organoids
genotype/variation
BRCA2 mutation
antibody
TCF7
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
phenol-chloroform extraction for ChIP DNA Rubicon ThruPLEX DNA-seq Kit
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
28418873
Reads aligned (%)
97.3
Duplicates removed (%)
34.3
Number of peaks
8344 (qval < 1E-05)
hg19
Number of total reads
28418873
Reads aligned (%)
97.0
Duplicates removed (%)
35.0
Number of peaks
8491 (qval < 1E-05)
Base call quality data from
DBCLS SRA