SRX573071
GSM1405122: IgG cycl; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
cell line
HeLa
treatment
IgG ChIP control in wt Hela cells
antibody
rabbit IgG (Santa Cruz, sc-2027)
source
IP with Ab rabbit IgG (Santa Cruz, sc-2027)
sample type
ChIP-seq

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq DNA Sample Prep Kit (Illumina, inc.)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32000130
Reads aligned (%)
97.8
Duplicates removed (%)
65.5
Number of peaks
978 (qval < 1E-05)

hg19

Number of total reads
32000130
Reads aligned (%)
96.9
Duplicates removed (%)
67.6
Number of peaks
1111 (qval < 1E-05)

Base call quality data from DBCLS SRA