Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AFF4

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
cell line
HeLa
treatment
AFF4 was profiled in a Hela cell clone upon EGF stimulation and depletion of INTS11
antibody
non-commercial rabbit anti-AFF4 Ref PMID 20159561
source
IP with non-commercial rabbit anti-AFF4 Ref PMID 20159561
sample type
ChIP-seq

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
23390749
Reads aligned (%)
81.5
Duplicates removed (%)
16.1
Number of peaks
7942 (qval < 1E-05)

hg38

Number of total reads
23390749
Reads aligned (%)
83.2
Duplicates removed (%)
14.8
Number of peaks
8008 (qval < 1E-05)

Base call quality data from DBCLS SRA