Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX3

Cell type

Cell type Class
Neural
Cell type
Neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
R1159Q/+ hNPCs
genotype/variation
R1159Q/+
sirna
none
lentiviral expression
none
antibody source
Novus biology AF2569

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
13290638
Reads aligned (%)
34.2
Duplicates removed (%)
38.0
Number of peaks
116 (qval < 1E-05)

hg38

Number of total reads
13290638
Reads aligned (%)
34.6
Duplicates removed (%)
37.7
Number of peaks
107 (qval < 1E-05)

Base call quality data from DBCLS SRA