SRX5706695
EC 039 HUVEC ChIP-seq H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

isolate
JTK026
age
newborn
biomaterial_provider
Lifeline Cell Technology
sex
male
tissue
Umbilical vein
cell_type
Umbilical vein endothelial cells
race
Arabic
sample_type
cell culture

Sequenced DNA Library

library_name
EC39_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57674455
Reads aligned (%)
99.1
Duplicates removed (%)
14.8
Number of peaks
19911 (qval < 1E-05)

hg19

Number of total reads
57674455
Reads aligned (%)
98.5
Duplicates removed (%)
16.1
Number of peaks
19735 (qval < 1E-05)

Base call quality data from DBCLS SRA