Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Neuroblastoma cell line
NA
NA

Attributes by original data submitter

Sample

source_name
Neuroblastoma cell line
growth medium
DMEM, 10 percent FCS
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
58889687
Reads aligned (%)
98.9
Duplicates removed (%)
8.5
Number of peaks
1421 (qval < 1E-05)

hg19

Number of total reads
58889687
Reads aligned (%)
98.1
Duplicates removed (%)
10.0
Number of peaks
1507 (qval < 1E-05)

Base call quality data from DBCLS SRA