Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Mutu-LCL
NA
NA

Attributes by original data submitter

Sample

source_name
MutuI-LCL cell
tissue
MutuI-LCL cell

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The 4C-seq was performed as previously reported with some modifications (van de Werken et al, 2012 Nat Methods 9, 969-972). For each primer view-point from EBV genome, a total 10 to 100 ng DNA was amplified by PCR. ChIP-Seq protocol is as described previously (Lu et al, 2010 Virology journal 7, 262).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
13233658
Reads aligned (%)
99.7
Duplicates removed (%)
3.8
Number of peaks
485 (qval < 1E-05)

hg19

Number of total reads
13233658
Reads aligned (%)
99.6
Duplicates removed (%)
4.0
Number of peaks
558 (qval < 1E-05)

Base call quality data from DBCLS SRA