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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: XRCC5
wikigenes
PDBj
CellType: 293
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5661462
ChIP-seq of 4OHT treated human HEK293T cells:KU80 antibody
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
XRCC5
Cell type
Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
isolate
aborted human embryo
age
Fetus
biomaterial_provider
Elsayed Zeinab
sex
female
tissue
Kidney
cell_line
HEK-293T cells
cell_type
epithelial
culture_collection
ATCC:3216
karyotype
64,XX
phenotype
kidney embryonic epithelial
sample_type
DNA
treatment
2uM 4OHT
library_type
chipSeq
antibody
KU80
Sequenced DNA Library
library_name
KU80_4OHT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
8527135
Reads aligned (%)
100.0
Duplicates removed (%)
0.2
Number of peaks
88 (qval < 1E-05)
hg19
Number of total reads
8527135
Reads aligned (%)
99.5
Duplicates removed (%)
1.2
Number of peaks
121 (qval < 1E-05)
Base call quality data from
DBCLS SRA