Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
XRCC5

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

isolate
aborted human embryo
age
Fetus
biomaterial_provider
Elsayed Zeinab
sex
female
tissue
Kidney
cell_line
HEK-293T cells
cell_type
epithelial
culture_collection
ATCC:3216
karyotype
64,XX
phenotype
kidney embryonic epithelial
sample_type
DNA
treatment
no treatment
library_type
chipSeq
antibody
KU80

Sequenced DNA Library

library_name
KU80 _untreated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
5214208
Reads aligned (%)
98.3
Duplicates removed (%)
1.2
Number of peaks
110 (qval < 1E-05)

hg38

Number of total reads
5214208
Reads aligned (%)
99.5
Duplicates removed (%)
0.5
Number of peaks
87 (qval < 1E-05)

Base call quality data from DBCLS SRA