Curated Sample Data


Genome
mm9
Antigen Class
Unclassified
Antigen
Unclassified
Cell type Class
Blood
Cell type
HPC-7

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
shSmc1a inducible shRNA in HPC
cell line
HPC-7
cell type
Hematopoietic stem and progenitors
genotype
HPC_shSmc1a

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
x-linking was performed with 1% Formaldehyde. Lysates were clarified from sonicated nuclei and chromatin proteins were isolated with antibodies. ChIP-Seq libraries were prepared for sequencing using a TruSeq ChIP Sample Prep Kit (Illumina) and standard Illumina protocols

Platform Information


instrument_model
Illumina HiSeq 4000

External Database Query

Logs in read processing pipeline


Number of total reads
39836357
Reads aligned (%)
70.2
Duplicates removed (%)
38.7
Number of peaks
26470 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA