Curated Sample Data


Genome
mm9
Antigen Class
Unclassified
Antigen
Unclassified
Cell type Class
Blood
Cell type
HPC-7

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
shStag2 inducible shRNA in HPC
cell line
HPC-7
cell type
Hematopoietic stem and progenitors
genotype
HPC_shStag2

Metadata from Sequence Read Archive

Library Description


library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Platform Information


instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

External Database Query

Logs in read processing pipeline


Number of total reads
70514241
Reads aligned (%)
95.7
Duplicates removed (%)
32.6
Number of peaks
42490 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA