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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: Embryonic heart
ATCC
MeSH
RIKEN BRC
SRX5637709
GSM3711205: NKX2-5 E9.25 heart rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Embryo
Cell type
Embryonic heart
NA
NA
Attributes by original data submitter
Sample
source_name
NKX2-5_E9.25_heart
strain
C57BL/6
developmental stage
E9.25 heart
chip antibody
H3K4me3, Millipore, 04-745, Lot: 3068440
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The hearts of E9.25 embryo was isolated and directly used for in situ ChIP After PCR enrichment using 2X KAPA master mix, products were purified and selected by AMPure XP beads for 200-1000 bp.
Sequencing Platform
instrument_model
Illumina NovaSeq 6000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
13753359
Reads aligned (%)
30.7
Duplicates removed (%)
40.7
Number of peaks
2962 (qval < 1E-05)
mm9
Number of total reads
13753359
Reads aligned (%)
30.7
Duplicates removed (%)
40.7
Number of peaks
2947 (qval < 1E-05)
Base call quality data from
DBCLS SRA