Curated Sample Data


Genome
mm9
Antigen Class
Input control
Antigen
Input control
Cell type Class
Embryo
Cell type
E7.0 embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
IgG_E7.0_embryo
strain
C57BL/6
developmental stage
E7.0_embryo
chip antibody
IgG, AB clonal, WH086883, AC005

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
E6.5, E7.0 and E7.75 embryo were directly isolated form uterus and used for in-situ ChIP After PCR enrichment using 2X KAPA master mix, products were purified and selected by AMPure XP beads for 200-1000 bp.

Platform Information


instrument_model
Illumina NovaSeq 6000

External Database Query

Logs in read processing pipeline


Number of total reads
10709489
Reads aligned (%)
49.6
Duplicates removed (%)
62.6
Number of peaks
59 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA