ChIP-Atlas: SRX5637705

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Embryo
Cell type: E6.5 embryos
NA: NA

Attributes by original data submitter

Sample

source_name: IgG_E6.5_embryo
strain: C57BL/6
developmental stage: E6.5_embryo
chip antibody: IgG, AB clonal, WH086883, AC005

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: E6.5, E7.0 and E7.75 embryo were directly isolated form uterus and used for in-situ ChIP After PCR enrichment using 2X KAPA master mix, products were purified and selected by AMPure XP beads for 200-1000 bp.

Sequencing Platform

instrument_model: Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 10485739
Reads aligned (%): 47.4
Duplicates removed (%): 38.7
Number of peaks: 66 (qval < 1E-05)

mm9

Number of total reads: 10485739
Reads aligned (%): 47.4
Duplicates removed (%): 38.6
Number of peaks: 61 (qval < 1E-05)

Base call quality data from DBCLS SRA