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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RUNX1
wikigenes
PDBj
CellType: MCF 10A
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5635067
GSM3704448: MCF10A cells RUNX1 ChIPseq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RUNX1
Cell type
Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease
Attributes by original data submitter
Sample
source_name
Engineered MCF10A cells (ATCC® CRL-10317)
cell line
MCF10A
genotype
RUNX1-deleted MCF10A cell line
treatment
transduced RUNX1-KO MCF10A cells with lentiviruses that inducibly express RUNX1; treated RUNX1-inducible MCF10A cells with doxycycline
chip antibody
anti-RUNX1
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNA was extracted by standard phenol approach. TruSeq ChIP Library Prep Kit (IP-202-1012)
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
91726821
Reads aligned (%)
97.5
Duplicates removed (%)
10.4
Number of peaks
7924 (qval < 1E-05)
hg19
Number of total reads
91726821
Reads aligned (%)
96.6
Duplicates removed (%)
12.1
Number of peaks
7206 (qval < 1E-05)
Base call quality data from
DBCLS SRA