Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
THRA

Cell type

Cell type Class
Neural
Cell type
Prefrontal Cortex
MeSH Description
The rostral part of the frontal lobe, bounded by the inferior precentral fissure in humans, which receives projection fibers from the MEDIODORSAL NUCLEUS OF THE THALAMUS. The prefrontal cortex receives afferent fibers from numerous structures of the DIENCEPHALON; MESENCEPHALON; and LIMBIC SYSTEM as well as cortical afferents of visual, auditory, and somatic origin.

Attributes by original data submitter

Sample

source_name
brain prefrontal cortex region tissues
disease state
AD
age
69
Sex
male
braak
-
chip antibody
THRA (SantaCruz, catalog# SC-56873, lot# J1614)
tissue
brain prefrontal cortex region tissues

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
20642015
Reads aligned (%)
134.2
Duplicates removed (%)
20.2
Number of peaks
256 (qval < 1E-05)

hg38

Number of total reads
20642015
Reads aligned (%)
136.6
Duplicates removed (%)
19.9
Number of peaks
694 (qval < 1E-05)

Base call quality data from DBCLS SRA