Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

THP-1

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Acute Myelogenous

Sample

source_name

THP-1-PMAVD3_Input-ChIP

cell line

THP-1

tissue/cell type

acute monocytic leukemia cell line treated with PMA and Vitamin D3

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model

Illumina HiSeq 1000

hg38

Number of total reads

38593958

Reads aligned (%)

98.0

Duplicates removed (%)

7.4

Number of peaks

1511 (qval < 1E-05)

hg19

Number of total reads

38593958

Reads aligned (%)

96.9

Duplicates removed (%)

8.6

Number of peaks

1352 (qval < 1E-05)