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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SPI1
wikigenes
PDBj
CellType: THP-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5574392
GSM3686970: THP-1-PMAVD3 PU.1-ChIP; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SPI1
Cell type
Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
source_name
THP-1-PMAVD3_PU.1-ChIP
cell line
THP-1
tissue/cell type
acute monocytic leukemia cell line treated with PMA and Vitamin D3
chip antibody
PU.1 (Santa Cruz, #sc-352X)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)
Sequencing Platform
instrument_model
Illumina HiSeq 1000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
34640311
Reads aligned (%)
71.2
Duplicates removed (%)
27.1
Number of peaks
120125 (qval < 1E-05)
hg38
Number of total reads
34640311
Reads aligned (%)
72.1
Duplicates removed (%)
26.6
Number of peaks
120541 (qval < 1E-05)
Base call quality data from
DBCLS SRA