Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1-PMAVD3_PU.1-ChIP
cell line
THP-1
tissue/cell type
acute monocytic leukemia cell line treated with PMA and Vitamin D3
chip antibody
PU.1 (Santa Cruz, #sc-352X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

hg19

Number of total reads
34640311
Reads aligned (%)
71.2
Duplicates removed (%)
27.1
Number of peaks
120125 (qval < 1E-05)

hg38

Number of total reads
34640311
Reads aligned (%)
72.1
Duplicates removed (%)
26.6
Number of peaks
120541 (qval < 1E-05)

Base call quality data from DBCLS SRA