SRX5574386
GSM3686964: NB-4 gDNA-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB-4_gDNA-ChIP
cell line
NB-4
tissue/cell type
acute promyelocytic leukemia cell line
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23148417
Reads aligned (%)
98.3
Duplicates removed (%)
4.1
Number of peaks
875 (qval < 1E-05)

hg19

Number of total reads
23148417
Reads aligned (%)
97.4
Duplicates removed (%)
5.6
Number of peaks
1014 (qval < 1E-05)

Base call quality data from DBCLS SRA