SRX5574383
GSM3686961: KG-1 PU.1-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
KG-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
KG-1_PU.1-ChIP
cell line
KG-1
tissue/cell type
acute myeloid leukemia cell line
chip antibody
PU.1 (Santa Cruz, #sc-352X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15592083
Reads aligned (%)
98.1
Duplicates removed (%)
6.3
Number of peaks
15189 (qval < 1E-05)

hg19

Number of total reads
15592083
Reads aligned (%)
97.2
Duplicates removed (%)
7.3
Number of peaks
15970 (qval < 1E-05)

Base call quality data from DBCLS SRA