Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
ML-2
Primary Tissue
Bone Marrow
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
ML-2_gDNA-ChIP
cell line
ML-2
tissue/cell type
acute myelomonocytic leukemia cell line
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

hg38

Number of total reads
22081873
Reads aligned (%)
98.7
Duplicates removed (%)
4.0
Number of peaks
881 (qval < 1E-05)

hg19

Number of total reads
22081873
Reads aligned (%)
97.8
Duplicates removed (%)
5.4
Number of peaks
1010 (qval < 1E-05)

Base call quality data from DBCLS SRA