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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: ML-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5574382
GSM3686960: ML-2 gDNA-ChIP; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
ML-2
Primary Tissue
Bone Marrow
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
source_name
ML-2_gDNA-ChIP
cell line
ML-2
tissue/cell type
acute myelomonocytic leukemia cell line
chip antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)
Sequencing Platform
instrument_model
Illumina HiSeq 1000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
22081873
Reads aligned (%)
98.7
Duplicates removed (%)
4.0
Number of peaks
881 (qval < 1E-05)
hg19
Number of total reads
22081873
Reads aligned (%)
97.8
Duplicates removed (%)
5.4
Number of peaks
1010 (qval < 1E-05)
Base call quality data from
DBCLS SRA