Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
ML-2
Primary Tissue
Bone Marrow
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
ML-2_PU.1-ChIP
cell line
ML-2
tissue/cell type
acute myelomonocytic leukemia cell line
chip antibody
PU.1 (Santa Cruz, #sc-352X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

hg19

Number of total reads
30643813
Reads aligned (%)
87.0
Duplicates removed (%)
10.2
Number of peaks
40653 (qval < 1E-05)

hg38

Number of total reads
30643813
Reads aligned (%)
88.8
Duplicates removed (%)
9.3
Number of peaks
40671 (qval < 1E-05)

Base call quality data from DBCLS SRA