SRX5574380
GSM3686958: EM-3 gDNA-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
EM-3
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
EM-3_gDNA-ChIP
cell line
EM-3
tissue/cell type
chronic myeloid leukemia in blast crisis cell line
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24197119
Reads aligned (%)
98.7
Duplicates removed (%)
4.6
Number of peaks
969 (qval < 1E-05)

hg19

Number of total reads
24197119
Reads aligned (%)
97.7
Duplicates removed (%)
6.0
Number of peaks
1031 (qval < 1E-05)

Base call quality data from DBCLS SRA