Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
DC18h_PU.1-ChIP
donr id
donorI
tissue/cell type
MO-derived
cell subtype
primary monocyte-derived dendritic cells
chip antibody
PU.1 (Santa Cruz, #sc-352X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

hg19

Number of total reads
21887724
Reads aligned (%)
76.5
Duplicates removed (%)
22.1
Number of peaks
76003 (qval < 1E-05)

hg38

Number of total reads
21887724
Reads aligned (%)
77.2
Duplicates removed (%)
21.7
Number of peaks
75989 (qval < 1E-05)

Base call quality data from DBCLS SRA