SRX5574349
GSM3686927: NEU Input-ChIP donorF; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

source_name
NEU_Input-ChIP
donr id
donorF
tissue/cell type
peripheral blood
cell subtype
primary neutrophils
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39462048
Reads aligned (%)
99.1
Duplicates removed (%)
20.8
Number of peaks
1168 (qval < 1E-05)

hg19

Number of total reads
39462048
Reads aligned (%)
98.2
Duplicates removed (%)
22.5
Number of peaks
1179 (qval < 1E-05)

Base call quality data from DBCLS SRA