Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SPI1
wikigenes
PDBj
CellType: Neutrophils
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5574348
GSM3686926: NEU PU.1-ChIP donorF; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SPI1
Cell type
Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.
Attributes by original data submitter
Sample
source_name
NEU_PU.1-ChIP
donr id
donorF
tissue/cell type
peripheral blood
cell subtype
primary neutrophils
chip antibody
PU.1 (Santa Cruz, #sc-352X)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
40726771
Reads aligned (%)
39.2
Duplicates removed (%)
59.7
Number of peaks
40531 (qval < 1E-05)
hg38
Number of total reads
40726771
Reads aligned (%)
41.0
Duplicates removed (%)
58.0
Number of peaks
39479 (qval < 1E-05)
Base call quality data from
DBCLS SRA