Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
BC_PU.1-ChIP
donr id
donorC
tissue/cell type
peripheral blood
cell subtype
primary B cells
chip antibody
PU.1 (Santa Cruz, #sc-352X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

hg19

Number of total reads
28215471
Reads aligned (%)
9.7
Duplicates removed (%)
88.2
Number of peaks
5322 (qval < 1E-05)

hg38

Number of total reads
28215471
Reads aligned (%)
10.9
Duplicates removed (%)
86.9
Number of peaks
5324 (qval < 1E-05)

Base call quality data from DBCLS SRA