Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
BC_PU.1-ChIP
donr id
donorA
tissue/cell type
peripheral blood
cell subtype
primary B cells
chip antibody
PU.1 (Santa Cruz, #sc-352X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

hg19

Number of total reads
34681072
Reads aligned (%)
21.4
Duplicates removed (%)
69.6
Number of peaks
17618 (qval < 1E-05)

hg38

Number of total reads
34681072
Reads aligned (%)
22.5
Duplicates removed (%)
68.3
Number of peaks
17532 (qval < 1E-05)

Base call quality data from DBCLS SRA