Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LEO1

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
ChIP-seq
cell line
HEK293 CDK12as
antibody
A300-175A, Bethyl Laboratories
treatment
1-NM-PP1 for 15 minutes

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA were purified from chromatin IP products. For ChIP-seq, libraries were prepared using Illumina's TruSeq ChIP library Preparation Kit according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
39254310
Reads aligned (%)
117.6
Duplicates removed (%)
16.7
Number of peaks
490 (qval < 1E-05)

hg38

Number of total reads
39254310
Reads aligned (%)
119.4
Duplicates removed (%)
16.3
Number of peaks
706 (qval < 1E-05)

Base call quality data from DBCLS SRA