SRX5556896
GSM3682552: ChIP-seq Input LEO1 NM 15 minutes R1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
ChIP-seq
cell line
HEK293 CDK12as
antibody
none
treatment
1-NM-PP1 for 15 minutes

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA were purified from chromatin IP products. For ChIP-seq, libraries were prepared using Illumina's TruSeq ChIP library Preparation Kit according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32405320
Reads aligned (%)
81.9
Duplicates removed (%)
3.4
Number of peaks
451 (qval < 1E-05)

hg19

Number of total reads
32405320
Reads aligned (%)
80.4
Duplicates removed (%)
3.5
Number of peaks
252 (qval < 1E-05)

Base call quality data from DBCLS SRA