Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HL-7702
NA
NA

Attributes by original data submitter

Sample

source_name
hepatocyte
genotype/variation
FLBIO-FBP1
cell type
Liver normal cell
passages
10-15
cell line
HL7702

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody (EZH2 and H3K27me3) or streptavidin beads (FBP1-avi). Illumina sequencing libraries were prepared from ChIP and input DNAs by performing standard consecutive enzymatic steps of end-polishing, dA-addition, and adaptor ligation (NEBNext® Ultra™ II DNA Library Prep, NEB, E7103).

Sequencing Platform

instrument_model
HiSeq X Ten

hg38

Number of total reads
25932855
Reads aligned (%)
75.5
Duplicates removed (%)
7.9
Number of peaks
2754 (qval < 1E-05)

hg19

Number of total reads
25932855
Reads aligned (%)
73.5
Duplicates removed (%)
9.1
Number of peaks
1669 (qval < 1E-05)

Base call quality data from DBCLS SRA