Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

Liver

cohort

Penn Cohort 1

tissue

liver

individual

B9

chip antibody

none (input)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina QIAGEN's AllPrep DNA/RNA/miRNA Universal Kit

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

24015986

Reads aligned (%)

84.2

Duplicates removed (%)

2.3

Number of peaks

921 (qval < 1E-05)

hg19

Number of total reads

24015986

Reads aligned (%)

83.1

Duplicates removed (%)

2.9

Number of peaks

641 (qval < 1E-05)