Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
cohort
Penn Cohort 1
tissue
liver
individual
B46
chip antibody
H3K4me3:ab8580

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina QIAGEN's AllPrep DNA/RNA/miRNA Universal Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
1695203
Reads aligned (%)
88.3
Duplicates removed (%)
0.6
Number of peaks
95 (qval < 1E-05)

hg19

Number of total reads
1695203
Reads aligned (%)
87.0
Duplicates removed (%)
0.9
Number of peaks
69 (qval < 1E-05)

Base call quality data from DBCLS SRA