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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ESR1
wikigenes
PDBj
CellType: Breast cancer cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5493766
GSM3660488: S181 ENOB ER; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ESR1
Cell type
Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA
Attributes by original data submitter
Sample
source_name
Patient derived xenograft, breast cancer
tissue
tumor tissue
chip antibody
ER
chip antibody vendor
Santa Cruz Biotechnology, Thermo
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tumors were harvested, flash frozen and sectioned. Chromatin was extracted using an SDS based sonication protocol and immunoprecipitated. DNA libraries were prepared using Swift Accel-NGS 2S Plus kit in an automated platform
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
24069169
Reads aligned (%)
95.1
Duplicates removed (%)
6.5
Number of peaks
405 (qval < 1E-05)
hg19
Number of total reads
24069169
Reads aligned (%)
94.2
Duplicates removed (%)
6.8
Number of peaks
367 (qval < 1E-05)
Base call quality data from
DBCLS SRA