SRX5493766
GSM3660488: S181 ENOB ER; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
Patient derived xenograft, breast cancer
tissue
tumor tissue
chip antibody
ER
chip antibody vendor
Santa Cruz Biotechnology, Thermo

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tumors were harvested, flash frozen and sectioned. Chromatin was extracted using an SDS based sonication protocol and immunoprecipitated. DNA libraries were prepared using Swift Accel-NGS 2S Plus kit in an automated platform

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24069169
Reads aligned (%)
94.2
Duplicates removed (%)
6.8
Number of peaks
367 (qval < 1E-05)

hg38

Number of total reads
24069169
Reads aligned (%)
95.1
Duplicates removed (%)
6.5
Number of peaks
405 (qval < 1E-05)

Base call quality data from DBCLS SRA