Antigen

Antigen Class

TFs and others

Antigen

FOXA1

Cell type

Cell type Class

Breast

Cell type

Breast cancer cells

NA

NA

Sample

source_name

Patient derived xenograft, breast cancer

tissue

tumor tissue

chip antibody

FOXA1

chip antibody vendor

abcam,abcam

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Tumors were harvested, flash frozen and sectioned. Chromatin was extracted using an SDS based sonication protocol and immunoprecipitated. DNA libraries were prepared using Swift Accel-NGS 2S Plus kit in an automated platform

Sequencing Platform

instrument_model

NextSeq 500

hg19

Number of total reads

25495417

Reads aligned (%)

187.7

Duplicates removed (%)

3.0

Number of peaks

13605 (qval < 1E-05)

hg38

Number of total reads

25495417

Reads aligned (%)

188.5

Duplicates removed (%)

3.0

Number of peaks

13586 (qval < 1E-05)