Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
mouse embryonic fibroblasts
strain
C57BL/6J-Tg(GOFGFP)11Imeg/Rbrc(OG)
gata transcription factors in infectionfect
GATA6
chip antibody
none
days
post-induction at day6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq: After sonicating nuclei, histone-DNA complexes were isolated with antibody. ChIP-Seq: Libraries were constructed according to Illumina's NEXTflexTM ChIP-Seq Kit (Catalog # 5143-02). RNA-Seq: Total RNA was extracted from each cell line using TRIzol reagent. RNA-Seq: 1 ug of total RNA was used to prepare libraries according to Illumina TruSeq RNA Sample Prep Kit (Part # 15027084).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
49729886
Reads aligned (%)
93.3
Duplicates removed (%)
11.8
Number of peaks
471 (qval < 1E-05)

mm9

Number of total reads
49729886
Reads aligned (%)
93.1
Duplicates removed (%)
11.8
Number of peaks
472 (qval < 1E-05)

Base call quality data from DBCLS SRA