Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
C-FA-iPSC#2
antibody
Anti-trimethyl-histoneH3(lys4) Polyclonal Antibody Cat. #07-473 Millipore
cell type
Induced pluripotent stem cells from human fibroblasts from patients with FA disease
genotype correction status
corrected

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
52942811
Reads aligned (%)
97.6
Duplicates removed (%)
26.4
Number of peaks
36340 (qval < 1E-05)

hg19

Number of total reads
52942811
Reads aligned (%)
97.3
Duplicates removed (%)
26.7
Number of peaks
36222 (qval < 1E-05)

Base call quality data from DBCLS SRA