Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP Prostate Carcinoma Cell Line
antibody
N/A
cell line
VCaP
tissue
Prostate

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Native ChIP was conducted as previously described using a monoclonal antibody against CENPA (Abcam ab13939). CENPA targeted ChIP DNA and input control DNA were prepared for parallel sequencing using the TruSeq ChIP Library Preparation kit (Illumina) according to the manufacturer's protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
67514183
Reads aligned (%)
96.6
Duplicates removed (%)
25.2
Number of peaks
1541 (qval < 1E-05)

hg19

Number of total reads
67514183
Reads aligned (%)
95.1
Duplicates removed (%)
26.1
Number of peaks
515 (qval < 1E-05)

Base call quality data from DBCLS SRA