Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gps2

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1_GPS2
cell line
3T3-L1
chip antibody
Anti-GPS2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) was performed as described (Perissi et al. 2004). Anti-GPS2 antibodies were generated in rabbit against specific peptides representing the C’terminus (aa 307-327) or N’terminus (aa 1-11). Extracted DNA was ligated to specific adaptors followed by deep sequencing on the Illumina GAII system according to the manufacturer’s instructions.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
22920963
Reads aligned (%)
27.4
Duplicates removed (%)
38.7
Number of peaks
1262 (qval < 1E-05)

mm9

Number of total reads
22920963
Reads aligned (%)
27.4
Duplicates removed (%)
39.1
Number of peaks
1263 (qval < 1E-05)

Base call quality data from DBCLS SRA