Antigen

Antigen Class

TFs and others

Antigen

ATF2

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

sample type

cell line

cell line

GM12878

sex

female

health state

unknown

dev_stage

adult

age

unknown

donor ID

ENCDO000AAK

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

69637556

Reads aligned (%)

84.7

Duplicates removed (%)

25.5

Number of peaks

8912 (qval < 1E-05)

hg19

Number of total reads

69637556

Reads aligned (%)

83.1

Duplicates removed (%)

25.8

Number of peaks

8125 (qval < 1E-05)