Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
Breast epithelium
NA
NA

Attributes by original data submitter

Sample

sex
male
tissue
breast epithelium
lab
Richard Myers, HAIB
sample_type
tissue
age
54 year
donor ID
ENCDO451RUA
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf extraction method: see document extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
58206371
Reads aligned (%)
90.6
Duplicates removed (%)
4.4
Number of peaks
1167 (qval < 1E-05)

hg38

Number of total reads
58206371
Reads aligned (%)
91.6
Duplicates removed (%)
4.0
Number of peaks
1725 (qval < 1E-05)

Base call quality data from DBCLS SRA