Curated Sample Data


Genome
hg19
Antigen Class
No description
Antigen
NA
Cell type Class
Breast
Cell type
Breast epithelium

Cell type information


NA
NA

Attributes by Original Data Submitter


sex
female
tissue
breast epithelium
lab
Richard Myers, HAIB
sample_type
tissue
age
53 year
donor ID
ENCDO793LXB
dev_stage
adult

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf extraction method: see document extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
33152710
Reads aligned (%)
94.6
Duplicates removed (%)
5.1
Number of peaks
22030 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA