Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
Breast epithelium
NA
NA

Attributes by original data submitter

Sample

sex
female
tissue
breast epithelium
lab
Richard Myers, HAIB
sample_type
tissue
age
51 year
donor ID
ENCDO271OUW
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf extraction method: see document extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
40703854
Reads aligned (%)
95.4
Duplicates removed (%)
5.2
Number of peaks
30195 (qval < 1E-05)

hg19

Number of total reads
40703854
Reads aligned (%)
94.8
Duplicates removed (%)
5.5
Number of peaks
29397 (qval < 1E-05)

Base call quality data from DBCLS SRA