Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF217

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample type
cell line
cell line
MCF-7
sex
female
health state
breast cancer (adenocarcinoma)
dev_stage
adult
age
69 year
donor ID
ENCDO000AAE
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
41597077
Reads aligned (%)
98.9
Duplicates removed (%)
13.9
Number of peaks
1691 (qval < 1E-05)

hg19

Number of total reads
41597077
Reads aligned (%)
97.9
Duplicates removed (%)
14.2
Number of peaks
693 (qval < 1E-05)

Base call quality data from DBCLS SRA