Antigen

Antigen Class

TFs and others

Antigen

TRIM22

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

sample type

cell line

cell line

MCF-7

sex

female

health state

breast cancer (adenocarcinoma)

dev_stage

adult

age

69 year

donor ID

ENCDO000AAE

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

47022021

Reads aligned (%)

98.5

Duplicates removed (%)

14.9

Number of peaks

4912 (qval < 1E-05)

hg19

Number of total reads

47022021

Reads aligned (%)

97.5

Duplicates removed (%)

15.3

Number of peaks

3472 (qval < 1E-05)