Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOA2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sex
female
cell line
K562
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
chronic myelogenous leukemia (CML)
age
53 year
donor ID
ENCDO000AAD
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
65007064
Reads aligned (%)
94.9
Duplicates removed (%)
13.8
Number of peaks
4479 (qval < 1E-05)

hg19

Number of total reads
65007064
Reads aligned (%)
93.8
Duplicates removed (%)
13.9
Number of peaks
3657 (qval < 1E-05)

Base call quality data from DBCLS SRA