Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Digestive tract
Cell type
Gastroesophageal sphincter
NA
NA

Attributes by original data submitter

Sample

sample type
tissue
tissue
gastroesophageal sphincter
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO793LXB
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
78907274
Reads aligned (%)
97.7
Duplicates removed (%)
46.8
Number of peaks
42694 (qval < 1E-05)

hg19

Number of total reads
78907274
Reads aligned (%)
97.0
Duplicates removed (%)
47.1
Number of peaks
41769 (qval < 1E-05)

Base call quality data from DBCLS SRA